STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JL57_13020Cell filamentation protein Fic; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)    
Predicted Functional Partners:
JL57_04770
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
JL57_28100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
JL57_26215
Fic family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.725
dnaK
Molecular chaperone DnaK; Heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.652
JL57_15005
Chromosome segregation protein ParM; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.652
JL57_26745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.645
JL57_04410
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
JL57_07075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.402
Your Current Organism:
Desulfosporosinus sp. BICA19
NCBI taxonomy Id: 1531958
Other names: D. sp. BICA1-9, Desulfosporosinus sp. BICA1-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.