STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JL57_20245Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)    
Predicted Functional Partners:
JL57_20240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.941
JL57_20250
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.791
JL57_01920
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.751
JL57_02665
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.751
JL57_04300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.751
JL57_14260
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.751
JL57_15660
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.751
JL57_15935
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.751
JL57_22545
Sigma-70 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.751
JL57_31005
Sigma-70 family RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.751
Your Current Organism:
Desulfosporosinus sp. BICA19
NCBI taxonomy Id: 1531958
Other names: D. sp. BICA1-9, Desulfosporosinus sp. BICA1-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.