STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JL57_20520Ribokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)    
Predicted Functional Partners:
JL57_20525
Ribose pyranase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.993
JL57_13815
Ribose pyranase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.973
JL57_00065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.885
JL57_12820
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.870
JL57_06320
Adenylosuccinate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.869
JL57_03215
Catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-hosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.832
JL57_23770
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.832
JL57_15610
Deoxyribose-phosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.831
JL57_15715
Ribose-phosphate pyrophosphokinase; Catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.828
JL57_20540
D-ribose transporter subunit RbsB; Periplasmic substrate-binding component of the ATP-dependent ribose transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.825
Your Current Organism:
Desulfosporosinus sp. BICA19
NCBI taxonomy Id: 1531958
Other names: D. sp. BICA1-9, Desulfosporosinus sp. BICA1-9
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