STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JL50_0584050S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)    
Predicted Functional Partners:
JL50_05835
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
JL50_05875
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
JL50_05880
30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
JL50_05900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
JL50_05915
50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
JL50_05920
50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
JL50_05925
30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
JL50_05930
50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
JL50_05935
50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
JL50_05940
30S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
Your Current Organism:
Peptococcaceae bacterium BICA17
NCBI taxonomy Id: 1531961
Other names: P. bacterium BICA1-7, Peptococcaceae bacterium BICA1-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.