STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JL50_21075Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)    
Predicted Functional Partners:
JL50_21070
AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.807
JL50_16905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
JL50_18105
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.720
JL50_13255
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.715
JL50_18360
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.711
JL50_21185
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.703
JL50_13285
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.701
JL50_00210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.697
JL50_18710
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.694
JL50_08135
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.693
Your Current Organism:
Peptococcaceae bacterium BICA17
NCBI taxonomy Id: 1531961
Other names: P. bacterium BICA1-7, Peptococcaceae bacterium BICA1-7
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