STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JL39_23935Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)    
Predicted Functional Partners:
JL39_28115
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.869
JL39_07965
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.866
JL39_06780
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.844
JL39_08830
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.843
JL39_27945
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.836
JL39_20725
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.823
JL39_01995
Hypothetical protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.817
JL39_16180
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.813
JL39_08090
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.810
JL39_27570
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.800
Your Current Organism:
Rhizobium sp. YS1r
NCBI taxonomy Id: 1532558
Other names: R. sp. YS-1r, Rhizobium sp. YS-1r
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.