STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE42769.1Stage V sporulation protein B. (516 aa)    
Predicted Functional Partners:
SHE42798.1
Tetrapyrrole methylase family protein / MazG family protein.
  
    0.813
SHE42736.1
Transcriptional regulator, AbrB family.
 
   
 0.763
SHE89604.1
Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family.
  
     0.670
SHE42849.1
Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain.
  
    0.647
SHE42822.1
DNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.638
SHE42871.1
Sporulation protein YabP.
     
 0.634
SHE42906.1
Spore cortex biosynthesis protein YabQ.
 
   
 0.630
SHF07700.1
tRNA (adenine22-N1)-methyltransferase.
  
     0.617
SHE42938.1
Cell division protein FtsL.
 
     0.592
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
  
 0.572
Your Current Organism:
Clostridium fallax
NCBI taxonomy Id: 1533
Other names: ATCC 19400, BCRC 14512, Bacillus fallax, C. fallax, CCRC 14512, CCRC:14512, CCUG 4853, DSM 2631, NCIMB 10634, NCTC 8380, VPI 5729, Vallorillus fallax
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