STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE40345.1Putative peptidoglycan binding domain-containing protein. (449 aa)    
Predicted Functional Partners:
SHE40321.1
Subtilase family protein; Belongs to the peptidase S8 family.
    0.939
SHE47863.1
SH3 domain-containing protein.
    
 0.823
SHE40274.1
Protein of unknown function.
       0.592
SHE40299.1
Helix-turn-helix.
       0.592
SHE40250.1
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.580
SHE82452.1
Single-stranded DNA-binding protein.
  
     0.578
SHE56204.1
Stage V sporulation protein AD.
  
   
 0.513
SHE82781.1
Small, acid-soluble spore protein, alpha/beta type.
  
     0.502
SHE56082.1
Stage II sporulation protein P.
  
   
 0.473
SHF07373.1
Similar to stage IV sporulation protein.
  
     0.473
Your Current Organism:
Clostridium fallax
NCBI taxonomy Id: 1533
Other names: ATCC 19400, BCRC 14512, Bacillus fallax, C. fallax, CCRC 14512, CCRC:14512, CCUG 4853, DSM 2631, NCIMB 10634, NCTC 8380, VPI 5729, Vallorillus fallax
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