STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE53742.1Transcriptional regulator, GntR family. (473 aa)    
Predicted Functional Partners:
SHE53775.1
Uncharacterized protein, YigZ family.
  
    0.814
SHE53723.1
Hypothetical protein.
       0.809
SHE53795.1
DNA-binding regulatory protein, YebC/PmpR family.
       0.609
SHE99686.1
4Fe-4S dicluster domain-containing protein.
    
   0.606
SHE53694.1
Hypothetical protein.
       0.568
SHE83263.1
FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase.
 
 0.540
SHF07719.1
Dinuclear metal center protein, YbgI/SA1388 family.
   
    0.499
SHE58141.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
       0.495
SHE65251.1
Tryptophan synthase, alpha chain; Belongs to the TrpA family.
   
 
 0.493
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
    
 0.491
Your Current Organism:
Clostridium fallax
NCBI taxonomy Id: 1533
Other names: ATCC 19400, BCRC 14512, Bacillus fallax, C. fallax, CCRC 14512, CCRC:14512, CCUG 4853, DSM 2631, NCIMB 10634, NCTC 8380, VPI 5729, Vallorillus fallax
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