STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE72517.1Two-component system, sensor histidine kinase YesM. (598 aa)    
Predicted Functional Partners:
SHE85449.1
PAS domain-containing protein.
   
 0.996
SHE72474.1
Two component transcriptional regulator, AraC family.
 
 
 0.989
SHE72498.1
Response regulator receiver domain-containing protein.
 
 
 0.983
SHE48992.1
Response regulator receiver domain-containing protein.
 
 
 0.977
SHE34648.1
PAS/PAC sensor signal transduction histidine kinase.
   
 0.972
SHE34676.1
PAS domain S-box-containing protein.
   
 0.972
SHE79773.1
Two component transcriptional regulator, LytTR family.
 
 
 0.936
SHF00742.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  
 
0.931
SHF19035.1
Response regulator receiver domain-containing protein.
 
 
 0.907
SHE40752.1
Two component transcriptional regulator, LytTR family.
 
 
 0.899
Your Current Organism:
Clostridium fallax
NCBI taxonomy Id: 1533
Other names: ATCC 19400, BCRC 14512, Bacillus fallax, C. fallax, CCRC 14512, CCRC:14512, CCUG 4853, DSM 2631, NCIMB 10634, NCTC 8380, VPI 5729, Vallorillus fallax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.