Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHE31445.1 | SHE58141.1 | SAMN05443638_10123 | SAMN05443638_105109 | Nitrite/Sulfite reductase ferredoxin-like half domain-containing protein. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.935 |
SHE31445.1 | SHE65485.1 | SAMN05443638_10123 | SAMN05443638_10713 | Nitrite/Sulfite reductase ferredoxin-like half domain-containing protein. | Ferredoxin hydrogenase. | 0.949 |
SHE31445.1 | SHE70373.1 | SAMN05443638_10123 | SAMN05443638_10863 | Nitrite/Sulfite reductase ferredoxin-like half domain-containing protein. | Flavorubredoxin. | 0.950 |
SHE31445.1 | SHE92678.1 | SAMN05443638_10123 | SAMN05443638_11829 | Nitrite/Sulfite reductase ferredoxin-like half domain-containing protein. | Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.597 |
SHE31445.1 | hcp | SAMN05443638_10123 | SAMN05443638_10964 | Nitrite/Sulfite reductase ferredoxin-like half domain-containing protein. | Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.812 |
SHE31445.1 | rnfB | SAMN05443638_10123 | SAMN05443638_13421 | Nitrite/Sulfite reductase ferredoxin-like half domain-containing protein. | Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.634 |
SHE40832.1 | SHE58141.1 | SAMN05443638_10272 | SAMN05443638_105109 | BFD-like [2Fe-2S] binding domain-containing protein. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.935 |
SHE40832.1 | SHE65485.1 | SAMN05443638_10272 | SAMN05443638_10713 | BFD-like [2Fe-2S] binding domain-containing protein. | Ferredoxin hydrogenase. | 0.949 |
SHE40832.1 | SHE70373.1 | SAMN05443638_10272 | SAMN05443638_10863 | BFD-like [2Fe-2S] binding domain-containing protein. | Flavorubredoxin. | 0.426 |
SHE40832.1 | SHE92678.1 | SAMN05443638_10272 | SAMN05443638_11829 | BFD-like [2Fe-2S] binding domain-containing protein. | Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.502 |
SHE40832.1 | hcp | SAMN05443638_10272 | SAMN05443638_10964 | BFD-like [2Fe-2S] binding domain-containing protein. | Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.765 |
SHE40832.1 | rnfB | SAMN05443638_10272 | SAMN05443638_13421 | BFD-like [2Fe-2S] binding domain-containing protein. | Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.634 |
SHE58141.1 | SHE31445.1 | SAMN05443638_105109 | SAMN05443638_10123 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Nitrite/Sulfite reductase ferredoxin-like half domain-containing protein. | 0.935 |
SHE58141.1 | SHE40832.1 | SAMN05443638_105109 | SAMN05443638_10272 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | BFD-like [2Fe-2S] binding domain-containing protein. | 0.935 |
SHE58141.1 | SHE65485.1 | SAMN05443638_105109 | SAMN05443638_10713 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Ferredoxin hydrogenase. | 0.988 |
SHE58141.1 | SHE70373.1 | SAMN05443638_105109 | SAMN05443638_10863 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Flavorubredoxin. | 0.979 |
SHE58141.1 | SHE73788.1 | SAMN05443638_105109 | SAMN05443638_10976 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Anaerobic sulfite reductase subunit A. | 0.981 |
SHE58141.1 | SHE92678.1 | SAMN05443638_105109 | SAMN05443638_11829 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.983 |
SHE58141.1 | SHE98628.1 | SAMN05443638_105109 | SAMN05443638_12220 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | NADPH-dependent glutamate synthase beta chain. | 0.987 |
SHE58141.1 | SHF12599.1 | SAMN05443638_105109 | SAMN05443638_13617 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | [FeFe] hydrogenase, group B1/B3. | 0.988 |
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