STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE79876.1Sarcosine oxidase subunit alpha. (326 aa)    
Predicted Functional Partners:
SHE99402.1
CxxC motif-containing protein.
 
    0.969
SHE99439.1
Glycerol-3-phosphate dehydrogenase.
 
 0.954
SHE75118.1
L-2-hydroxyglutarate oxidase LhgO.
 
 0.872
SHE79931.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
    
  0.870
SHE78603.1
Thioredoxin 1.
   
 0.836
SHE48050.1
Thioredoxin; Belongs to the thioredoxin family.
  
 0.833
SHE34270.1
Thioredoxin 1.
  
 0.790
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
   
 
 0.775
SHE50994.1
Methyltransferase domain-containing protein.
   
 
 0.755
SHE45637.1
Thioredoxin reductase (NADPH).
  
 0.752
Your Current Organism:
Clostridium fallax
NCBI taxonomy Id: 1533
Other names: ATCC 19400, BCRC 14512, Bacillus fallax, C. fallax, CCRC 14512, CCRC:14512, CCUG 4853, DSM 2631, NCIMB 10634, NCTC 8380, VPI 5729, Vallorillus fallax
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