STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE85175.1NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family. (237 aa)    
Predicted Functional Partners:
SHE79931.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
  
 
  0.904
SHE39518.1
Putative hydroxymethylpyrimidine transport system substrate-binding protein.
  
 
  0.850
SHE58141.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.786
SHE70373.1
Flavorubredoxin.
    
 0.774
SHE85154.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.690
SHE93929.1
Glucose inhibited division protein A.
    
 0.687
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
 0.678
SHF00969.1
SagB-type dehydrogenase domain-containing protein.
  
 
 0.672
SHF04079.1
butyryl-CoA dehydrogenase.
  
 
 0.653
SHE93808.1
NAD(P)H-flavin reductase.
 
 
  0.567
Your Current Organism:
Clostridium fallax
NCBI taxonomy Id: 1533
Other names: ATCC 19400, BCRC 14512, Bacillus fallax, C. fallax, CCRC 14512, CCRC:14512, CCUG 4853, DSM 2631, NCIMB 10634, NCTC 8380, VPI 5729, Vallorillus fallax
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