STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE86644.1Sporulation and spore germination. (190 aa)    
Predicted Functional Partners:
SHE86675.1
Phosphoribosyl 1,2-cyclic phosphodiesterase.
       0.823
murA-2
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
     
 0.803
SHE86624.1
SEC-C motif-containing protein.
       0.678
SHF11901.1
FMN-binding domain-containing protein.
  
     0.600
SHE69919.1
PDZ domain (Also known as DHR or GLGF).
  
     0.549
SHE82976.1
Putative sporulation protein YtxC.
  
     0.524
rlmH
23S rRNA (pseudouridine1915-N3)-methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.524
SHE87379.1
MazG-like family protein.
  
     0.491
SHE66143.1
Rod shape-determining protein MreD.
  
     0.485
SHE62710.1
N-acetylmuramoyl-L-alanine amidase.
 
  
  0.476
Your Current Organism:
Clostridium fallax
NCBI taxonomy Id: 1533
Other names: ATCC 19400, BCRC 14512, Bacillus fallax, C. fallax, CCRC 14512, CCRC:14512, CCUG 4853, DSM 2631, NCIMB 10634, NCTC 8380, VPI 5729, Vallorillus fallax
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.