STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (280 aa)    
Predicted Functional Partners:
KGJ92100.1
KEGG: 2-deoxy-D-gluconate 3-dehydrogenase.
 
 
 0.958
KGJ95062.1
KEGG: hypothetical protein.
 
   
 0.806
KGJ92105.1
KEGG: hypothetical protein.
 
   
 0.773
KGJ92098.1
Hypothetical protein; KEGG: TRAP transporter solute receptor, DctP family protein.
 
     0.738
KGJ88789.1
KEGG: hypothetical protein.
   
    0.733
parC
DNA topoisomerase (ATP-hydrolyzing); Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
   
    0.732
KGK00968.1
Hypothetical protein; KEGG: TetR family transcriptional regulator.
   
    0.732
KGJ92097.1
Hypothetical protein; KEGG: aspartate kinase.
 
     0.687
KGJ92103.1
2-dehydro-3-deoxygluconokinase; KEGG: ribokinase-like domain-containing protein.
 
  
 0.671
KGJ92096.1
Hypothetical protein; KEGG: TRAP transporter DctM-like subunit.
 
     0.660
Your Current Organism:
Thalassotalea sp. ND16A
NCBI taxonomy Id: 1535422
Other names: T. sp. ND16A
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.