STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000971395_01779Unannotated protein. (475 aa)    
Predicted Functional Partners:
GCA_000971395_00080
Unannotated protein.
    
  0.834
GCA_000971395_01499
Unannotated protein.
    
  0.834
GCA_000971395_01776
Unannotated protein.
    
  0.834
GCA_000971395_02621
Unannotated protein.
    
  0.834
GCA_000971395_02726
Unannotated protein.
    
  0.834
GCA_000971395_02242
Unannotated protein.
 
  
 0.832
GCA_000971395_01770
Unannotated protein.
    
 0.726
GCA_000971395_01780
Unannotated protein.
       0.538
GCA_000971395_01781
Unannotated protein.
       0.465
GCA_000971395_02080
Unannotated protein.
    
  0.446
Your Current Organism:
Lysinimicrobium iriomotense
NCBI taxonomy Id: 1536641
Other names: DSM 28146, L. iriomotense, Lysinimicrobium iriomotense Hamada et al. 2015, Lysinimicrobium sp. HI12-143, Lysinimicrobium sp. NBRC 109399, NBRC 109399, strain HI12-143
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.