AIQ36720.1 protein (Paenibacillus sp. FSLR50345)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AIQ36720.1

alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)

Predicted Functional Partners:

AIQ34901.1

0.968

AIQ37890.1

0.968

AIQ34915.1

0.966

AIQ34539.1

0.930

AIQ34739.1

0.929

AIQ34740.1

0.914

AIQ36722.1

0.671

AIQ36721.1

0.622

AIQ34540.1

0.612

AIQ36285.1

0.612

Your Current Organism:

Paenibacillus sp. FSLR50345

NCBI taxonomy Id: 1536770
Other names: P. sp. FSL R5-0345, Paenibacillus sp. FSL R5-0345

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIQ34539.1	AIQ34540.1	R50345_07875	R50345_07880	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
AIQ34539.1	AIQ34739.1	R50345_07875	R50345_09020	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
AIQ34539.1	AIQ34740.1	R50345_07875	R50345_09025	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
AIQ34539.1	AIQ34901.1	R50345_07875	R50345_09950	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AIQ34539.1	AIQ34915.1	R50345_07875	R50345_10030	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
AIQ34539.1	AIQ36285.1	R50345_07875	R50345_17620	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AIQ34539.1	AIQ36720.1	R50345_07875	R50345_20000	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
AIQ34539.1	AIQ37890.1	R50345_07875	R50345_26755	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AIQ34540.1	AIQ34539.1	R50345_07880	R50345_07875	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
AIQ34540.1	AIQ34739.1	R50345_07880	R50345_09020	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
AIQ34540.1	AIQ34740.1	R50345_07880	R50345_09025	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
AIQ34540.1	AIQ36720.1	R50345_07880	R50345_20000	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
AIQ34739.1	AIQ34539.1	R50345_09020	R50345_07875	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
AIQ34739.1	AIQ34540.1	R50345_09020	R50345_07880	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
AIQ34739.1	AIQ34740.1	R50345_09020	R50345_09025	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AIQ34739.1	AIQ34901.1	R50345_09020	R50345_09950	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AIQ34739.1	AIQ34915.1	R50345_09020	R50345_10030	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
AIQ34739.1	AIQ36285.1	R50345_09020	R50345_17620	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
AIQ34739.1	AIQ36720.1	R50345_09020	R50345_20000	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AIQ34739.1	AIQ37890.1	R50345_09020	R50345_26755	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966