A0A0Q3FZB1 protein (Brachypodium distachyon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0Q3FZB1

F-box domain-containing protein. (369 aa)

Predicted Functional Partners:

I1GKW3_BRADI

0.516

I1J0C5_BRADI

0.511

I1J2M3_BRADI

0.502

A0A0Q3GH41

0.475

A0A0Q3L609

0.472

A0A2K2CIM2

0.465

I1H8H6_BRADI

0.458

A0A0Q3KSV3

0.454

I1IF23_BRADI

0.438

A0A0Q3QFT0

0.435

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3FZB1	A0A0Q3GH41	A0A0Q3FZB1	A0A0Q3GH41	F-box domain-containing protein.	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.475
A0A0Q3FZB1	A0A0Q3KSV3	A0A0Q3FZB1	A0A0Q3KSV3	F-box domain-containing protein.	Uncharacterized protein.	0.454
A0A0Q3FZB1	A0A0Q3L609	A0A0Q3FZB1	A0A0Q3L609	F-box domain-containing protein.	Uncharacterized protein.	0.472
A0A0Q3FZB1	A0A0Q3QFT0	A0A0Q3FZB1	A0A0Q3QFT0	F-box domain-containing protein.	Uncharacterized protein.	0.435
A0A0Q3FZB1	A0A2K2CIM2	A0A0Q3FZB1	A0A2K2CIM2	F-box domain-containing protein.	F-box domain-containing protein.	0.465
A0A0Q3FZB1	I1GKW3_BRADI	A0A0Q3FZB1	I1GKW3	F-box domain-containing protein.	AvrRpt-cleavage domain-containing protein.	0.516
A0A0Q3FZB1	I1H8H6_BRADI	A0A0Q3FZB1	I1H8H6	F-box domain-containing protein.	Uncharacterized protein.	0.458
A0A0Q3FZB1	I1IF23_BRADI	A0A0Q3FZB1	I1IF23	F-box domain-containing protein.	Uncharacterized protein.	0.438
A0A0Q3FZB1	I1J0C5_BRADI	A0A0Q3FZB1	I1J0C5	F-box domain-containing protein.	Uncharacterized protein.	0.511
A0A0Q3FZB1	I1J2M3_BRADI	A0A0Q3FZB1	I1J2M3	F-box domain-containing protein.	Uncharacterized protein.	0.502
A0A0Q3GH41	A0A0Q3FZB1	A0A0Q3GH41	A0A0Q3FZB1	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	F-box domain-containing protein.	0.475
A0A0Q3GH41	I1GKW3_BRADI	A0A0Q3GH41	I1GKW3	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	AvrRpt-cleavage domain-containing protein.	0.410
A0A0Q3GH41	I1J2M3_BRADI	A0A0Q3GH41	I1J2M3	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	Uncharacterized protein.	0.477
A0A0Q3KSV3	A0A0Q3FZB1	A0A0Q3KSV3	A0A0Q3FZB1	Uncharacterized protein.	F-box domain-containing protein.	0.454
A0A0Q3KSV3	A0A0Q3QFT0	A0A0Q3KSV3	A0A0Q3QFT0	Uncharacterized protein.	Uncharacterized protein.	0.416
A0A0Q3KSV3	A0A2K2CIM2	A0A0Q3KSV3	A0A2K2CIM2	Uncharacterized protein.	F-box domain-containing protein.	0.473
A0A0Q3KSV3	I1J0C5_BRADI	A0A0Q3KSV3	I1J0C5	Uncharacterized protein.	Uncharacterized protein.	0.504
A0A0Q3L609	A0A0Q3FZB1	A0A0Q3L609	A0A0Q3FZB1	Uncharacterized protein.	F-box domain-containing protein.	0.472
A0A0Q3L609	I1H8H6_BRADI	A0A0Q3L609	I1H8H6	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A0Q3L609	I1J0C5_BRADI	A0A0Q3L609	I1J0C5	Uncharacterized protein.	Uncharacterized protein.	0.406