A0A0Q3PMA3 protein (Brachypodium distachyon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0Q3PMA3

Uncharacterized protein. (593 aa)

Predicted Functional Partners:

I1IEH8_BRADI

0.435

A0A0Q3E762

0.411

A0A0Q3GKW7

0.411

A0A0Q3IJ64

0.411

A0A0Q3IL00

0.411

A0A0Q3M7U0

0.411

A0A2K2D9I3

0.411

I1HKY9_BRADI

0.411

I1HPN8_BRADI

0.411

I1HQ57_BRADI

0.411

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3E762	A0A0Q3PMA3	A0A0Q3E762	A0A0Q3PMA3	Uncharacterized protein.	Uncharacterized protein.	0.411
A0A0Q3GKW7	A0A0Q3PMA3	A0A0Q3GKW7	A0A0Q3PMA3	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.411
A0A0Q3IJ64	A0A0Q3PMA3	A0A0Q3IJ64	A0A0Q3PMA3	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.411
A0A0Q3IL00	A0A0Q3PMA3	A0A0Q3IL00	A0A0Q3PMA3	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II.	Uncharacterized protein.	0.411
A0A0Q3M7U0	A0A0Q3PMA3	A0A0Q3M7U0	A0A0Q3PMA3	Uncharacterized protein.	Uncharacterized protein.	0.411
A0A0Q3PMA3	A0A0Q3E762	A0A0Q3PMA3	A0A0Q3E762	Uncharacterized protein.	Uncharacterized protein.	0.411
A0A0Q3PMA3	A0A0Q3GKW7	A0A0Q3PMA3	A0A0Q3GKW7	Uncharacterized protein.	FCP1 homology domain-containing protein.	0.411
A0A0Q3PMA3	A0A0Q3IJ64	A0A0Q3PMA3	A0A0Q3IJ64	Uncharacterized protein.	FCP1 homology domain-containing protein.	0.411
A0A0Q3PMA3	A0A0Q3IL00	A0A0Q3PMA3	A0A0Q3IL00	Uncharacterized protein.	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II.	0.411
A0A0Q3PMA3	A0A0Q3M7U0	A0A0Q3PMA3	A0A0Q3M7U0	Uncharacterized protein.	Uncharacterized protein.	0.411
A0A0Q3PMA3	A0A2K2D9I3	A0A0Q3PMA3	A0A2K2D9I3	Uncharacterized protein.	FCP1 homology domain-containing protein.	0.411
A0A0Q3PMA3	I1HKY9_BRADI	A0A0Q3PMA3	I1HKY9	Uncharacterized protein.	FCP1 homology domain-containing protein.	0.411
A0A0Q3PMA3	I1HPN8_BRADI	A0A0Q3PMA3	I1HPN8	Uncharacterized protein.	FCP1 homology domain-containing protein.	0.411
A0A0Q3PMA3	I1HQ57_BRADI	A0A0Q3PMA3	I1HQ57	Uncharacterized protein.	FCP1 homology domain-containing protein.	0.411
A0A0Q3PMA3	I1IEH8_BRADI	A0A0Q3PMA3	I1IEH8	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.435
A0A2K2D9I3	A0A0Q3PMA3	A0A2K2D9I3	A0A0Q3PMA3	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.411
I1HKY9_BRADI	A0A0Q3PMA3	I1HKY9	A0A0Q3PMA3	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.411
I1HPN8_BRADI	A0A0Q3PMA3	I1HPN8	A0A0Q3PMA3	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.411
I1HQ57_BRADI	A0A0Q3PMA3	I1HQ57	A0A0Q3PMA3	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.411
I1IEH8_BRADI	A0A0Q3PMA3	I1IEH8	A0A0Q3PMA3	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.435