A0A0Q3Q364 protein (Brachypodium distachyon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0Q3Q364

Uncharacterized protein. (103 aa)

Predicted Functional Partners:

I1IXT3_BRADI

0.806

I1H9S3_BRADI

0.710

I1HPK3_BRADI

0.694

C3SA59_BRADI

0.691

I1HB59_BRADI

0.691

I1J2S2_BRADI

0.629

I1GR49_BRADI

0.580

I1HEE4_BRADI

0.572

I1J2Y6_BRADI

0.557

I1IBV9_BRADI

0.540

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3Q364	C3SA59_BRADI	A0A0Q3Q364	C3SA59	Uncharacterized protein.	Ring box protein.	0.691
A0A0Q3Q364	I1GR49_BRADI	A0A0Q3Q364	I1GR49	Uncharacterized protein.	TIP120 domain-containing protein.	0.580
A0A0Q3Q364	I1H9S3_BRADI	A0A0Q3Q364	I1H9S3	Uncharacterized protein.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.710
A0A0Q3Q364	I1HB59_BRADI	A0A0Q3Q364	I1HB59	Uncharacterized protein.	RING-type domain-containing protein.	0.691
A0A0Q3Q364	I1HEE4_BRADI	A0A0Q3Q364	I1HEE4	Uncharacterized protein.	E2_bind domain-containing protein.	0.572
A0A0Q3Q364	I1HPK3_BRADI	A0A0Q3Q364	I1HPK3	Uncharacterized protein.	Uncharacterized protein.	0.694
A0A0Q3Q364	I1IBV9_BRADI	A0A0Q3Q364	I1IBV9	Uncharacterized protein.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.540
A0A0Q3Q364	I1IXT3_BRADI	A0A0Q3Q364	I1IXT3	Uncharacterized protein.	F-box domain-containing protein.	0.806
A0A0Q3Q364	I1J2S2_BRADI	A0A0Q3Q364	I1J2S2	Uncharacterized protein.	MPN domain-containing protein.	0.629
A0A0Q3Q364	I1J2Y6_BRADI	A0A0Q3Q364	I1J2Y6	Uncharacterized protein.	MPN domain-containing protein.	0.557
C3SA59_BRADI	A0A0Q3Q364	C3SA59	A0A0Q3Q364	Ring box protein.	Uncharacterized protein.	0.691
C3SA59_BRADI	I1GR49_BRADI	C3SA59	I1GR49	Ring box protein.	TIP120 domain-containing protein.	0.946
C3SA59_BRADI	I1H9S3_BRADI	C3SA59	I1H9S3	Ring box protein.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.465
C3SA59_BRADI	I1HB59_BRADI	C3SA59	I1HB59	Ring box protein.	RING-type domain-containing protein.	0.901
C3SA59_BRADI	I1HEE4_BRADI	C3SA59	I1HEE4	Ring box protein.	E2_bind domain-containing protein.	0.827
C3SA59_BRADI	I1HPK3_BRADI	C3SA59	I1HPK3	Ring box protein.	Uncharacterized protein.	0.596
C3SA59_BRADI	I1IBV9_BRADI	C3SA59	I1IBV9	Ring box protein.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.711
C3SA59_BRADI	I1IXT3_BRADI	C3SA59	I1IXT3	Ring box protein.	F-box domain-containing protein.	0.632
C3SA59_BRADI	I1J2S2_BRADI	C3SA59	I1J2S2	Ring box protein.	MPN domain-containing protein.	0.937
C3SA59_BRADI	I1J2Y6_BRADI	C3SA59	I1J2Y6	Ring box protein.	MPN domain-containing protein.	0.772