STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0Q3QSY2HDAC_interact domain-containing protein. (826 aa)    
Predicted Functional Partners:
A0A0Q3H114
MRG domain-containing protein.
    
 0.815
A0A0Q3KR35
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.758
A0A2K2DDB2
Hist_deacetyl domain-containing protein.
   
 0.758
I1GXR6_BRADI
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.758
I1HYR0_BRADI
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.758
I1I3A6_BRADI
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.758
I1IA61_BRADI
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.758
I1I9M8_BRADI
Uncharacterized protein.
    
 0.748
A0A0Q3HKZ2
Uncharacterized protein.
   
 
 0.727
A0A0Q3SF01
Uncharacterized protein.
   
 
 0.727
Your Current Organism:
Brachypodium distachyon
NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome
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