STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I1H3Q3_BRADItRNA (guanine(26)-N(2))-dimethyltransferase. (595 aa)    
Predicted Functional Partners:
I1J173_BRADI
WD_REPEATS_REGION domain-containing protein.
   
    0.715
I1GU05_BRADI
SAM_MT_TRM5_TYW2 domain-containing protein.
   
  
 0.633
I1HU93_BRADI
Brix domain-containing protein.
   
  
 0.607
I1IQH7_BRADI
Brix domain-containing protein.
   
  
 0.607
I1GNL4_BRADI
Uncharacterized protein.
   
    0.598
I1IB32_BRADI
Brix domain-containing protein.
   
    0.584
A0A0Q3EG88
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
   0.576
A0A0Q3S350
WD_REPEATS_REGION domain-containing protein.
   
    0.563
I1GSM6_BRADI
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
    0.559
I1IAI3_BRADI
UPF0020 domain-containing protein.
   
 
 0.559
Your Current Organism:
Brachypodium distachyon
NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome
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