I1HLQ1_BRADI protein (Brachypodium distachyon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I1HLQ1_BRADI

Uncharacterized protein. (188 aa)

Predicted Functional Partners:

I1HVA5_BRADI

0.528

I1HVA0_BRADI

0.527

I1GTG3_BRADI

0.524

I1GKX3_BRADI

0.515

A0A0Q3IPC8

0.513

I1IVY0_BRADI

0.511

A0A0Q3EAZ3

0.504

A0A2K2DPE9

0.503

I1HLF4_BRADI

0.501

I1HSX1_BRADI

0.501

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3EAZ3	A0A0Q3IPC8	A0A0Q3EAZ3	A0A0Q3IPC8	GUB_WAK_bind domain-containing protein.	Uncharacterized protein.	0.416
A0A0Q3EAZ3	A0A2K2DPE9	A0A0Q3EAZ3	A0A2K2DPE9	GUB_WAK_bind domain-containing protein.	Uncharacterized protein.	0.459
A0A0Q3EAZ3	I1GKX3_BRADI	A0A0Q3EAZ3	I1GKX3	GUB_WAK_bind domain-containing protein.	CRIB domain-containing protein.	0.479
A0A0Q3EAZ3	I1GTG3_BRADI	A0A0Q3EAZ3	I1GTG3	GUB_WAK_bind domain-containing protein.	DUF4408 domain-containing protein.	0.523
A0A0Q3EAZ3	I1HLF4_BRADI	A0A0Q3EAZ3	I1HLF4	GUB_WAK_bind domain-containing protein.	Uncharacterized protein.	0.463
A0A0Q3EAZ3	I1HLQ1_BRADI	A0A0Q3EAZ3	I1HLQ1	GUB_WAK_bind domain-containing protein.	Uncharacterized protein.	0.504
A0A0Q3EAZ3	I1HSX1_BRADI	A0A0Q3EAZ3	I1HSX1	GUB_WAK_bind domain-containing protein.	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	0.436
A0A0Q3EAZ3	I1HVA0_BRADI	A0A0Q3EAZ3	I1HVA0	GUB_WAK_bind domain-containing protein.	Uncharacterized protein.	0.484
A0A0Q3EAZ3	I1HVA5_BRADI	A0A0Q3EAZ3	I1HVA5	GUB_WAK_bind domain-containing protein.	Uncharacterized protein.	0.473
A0A0Q3EAZ3	I1IVY0_BRADI	A0A0Q3EAZ3	I1IVY0	GUB_WAK_bind domain-containing protein.	Uncharacterized protein.	0.513
A0A0Q3IPC8	A0A0Q3EAZ3	A0A0Q3IPC8	A0A0Q3EAZ3	Uncharacterized protein.	GUB_WAK_bind domain-containing protein.	0.416
A0A0Q3IPC8	A0A2K2DPE9	A0A0Q3IPC8	A0A2K2DPE9	Uncharacterized protein.	Uncharacterized protein.	0.459
A0A0Q3IPC8	I1GKX3_BRADI	A0A0Q3IPC8	I1GKX3	Uncharacterized protein.	CRIB domain-containing protein.	0.525
A0A0Q3IPC8	I1GTG3_BRADI	A0A0Q3IPC8	I1GTG3	Uncharacterized protein.	DUF4408 domain-containing protein.	0.525
A0A0Q3IPC8	I1HLF4_BRADI	A0A0Q3IPC8	I1HLF4	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A0Q3IPC8	I1HLQ1_BRADI	A0A0Q3IPC8	I1HLQ1	Uncharacterized protein.	Uncharacterized protein.	0.513
A0A0Q3IPC8	I1HSX1_BRADI	A0A0Q3IPC8	I1HSX1	Uncharacterized protein.	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	0.531
A0A0Q3IPC8	I1HVA0_BRADI	A0A0Q3IPC8	I1HVA0	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A0Q3IPC8	I1HVA5_BRADI	A0A0Q3IPC8	I1HVA5	Uncharacterized protein.	Uncharacterized protein.	0.511
A0A0Q3IPC8	I1IVY0_BRADI	A0A0Q3IPC8	I1IVY0	Uncharacterized protein.	Uncharacterized protein.	0.523