I1HNT3_BRADI protein (Brachypodium distachyon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I1HNT3_BRADI

Uncharacterized protein. (1205 aa)

Predicted Functional Partners:

I1HUT7_BRADI

0.691

I1I092_BRADI

0.551

I1HF77_BRADI

0.519

I1IZC5_BRADI

0.495

A0A0Q3M1D9

0.485

A0A2K2DC23

0.485

A0A0Q3H4R5

0.483

A0A0Q3ECY7

0.475

A0A0Q3EHP3

0.475

A0A0Q3KVS3

0.475

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3ECY7	I1HNT3_BRADI	A0A0Q3ECY7	I1HNT3	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A0Q3EHP3	I1HNT3_BRADI	A0A0Q3EHP3	I1HNT3	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A0Q3H4R5	I1HF77_BRADI	A0A0Q3H4R5	I1HF77	Uncharacterized protein.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.414
A0A0Q3H4R5	I1HNT3_BRADI	A0A0Q3H4R5	I1HNT3	Uncharacterized protein.	Uncharacterized protein.	0.483
A0A0Q3KVS3	I1HNT3_BRADI	A0A0Q3KVS3	I1HNT3	Uncharacterized protein.	Uncharacterized protein.	0.475
A0A0Q3M1D9	I1HNT3_BRADI	A0A0Q3M1D9	I1HNT3	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Uncharacterized protein.	0.485
A0A2K2DC23	I1HNT3_BRADI	A0A2K2DC23	I1HNT3	Uncharacterized protein.	Uncharacterized protein.	0.485
I1HF77_BRADI	A0A0Q3H4R5	I1HF77	A0A0Q3H4R5	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Uncharacterized protein.	0.414
I1HF77_BRADI	I1HNT3_BRADI	I1HF77	I1HNT3	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Uncharacterized protein.	0.519
I1HF77_BRADI	I1HUT7_BRADI	I1HF77	I1HUT7	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Uncharacterized protein.	0.414
I1HNT3_BRADI	A0A0Q3ECY7	I1HNT3	A0A0Q3ECY7	Uncharacterized protein.	Uncharacterized protein.	0.475
I1HNT3_BRADI	A0A0Q3EHP3	I1HNT3	A0A0Q3EHP3	Uncharacterized protein.	Uncharacterized protein.	0.475
I1HNT3_BRADI	A0A0Q3H4R5	I1HNT3	A0A0Q3H4R5	Uncharacterized protein.	Uncharacterized protein.	0.483
I1HNT3_BRADI	A0A0Q3KVS3	I1HNT3	A0A0Q3KVS3	Uncharacterized protein.	Uncharacterized protein.	0.475
I1HNT3_BRADI	A0A0Q3M1D9	I1HNT3	A0A0Q3M1D9	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.485
I1HNT3_BRADI	A0A2K2DC23	I1HNT3	A0A2K2DC23	Uncharacterized protein.	Uncharacterized protein.	0.485
I1HNT3_BRADI	I1HF77_BRADI	I1HNT3	I1HF77	Uncharacterized protein.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.519
I1HNT3_BRADI	I1HUT7_BRADI	I1HNT3	I1HUT7	Uncharacterized protein.	Uncharacterized protein.	0.691
I1HNT3_BRADI	I1I092_BRADI	I1HNT3	I1I092	Uncharacterized protein.	Nicalin; Belongs to the nicastrin family.	0.551
I1HNT3_BRADI	I1IZC5_BRADI	I1HNT3	I1IZC5	Uncharacterized protein.	Uncharacterized protein.	0.495