STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NDPK5Nucleoside diphosphate kinase. (179 aa)    
Predicted Functional Partners:
I1HDC6_BRADI
Uncharacterized protein.
   
  0.929
A0A0Q3NZG5
Ribosomal_S10 domain-containing protein.
   
 0.906
I1H1V2_BRADI
Ribosomal_S10 domain-containing protein.
   
 0.906
A0A0Q3L4T4
Uncharacterized protein.
  
 0.903
A0A2K2CNC1
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
  
 0.903
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
   
  0.902
I1HVZ5_BRADI
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
  
  0.895
I1HIL8_BRADI
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
  
 0.888
A0A0Q3LIF0
Uncharacterized protein.
  
 0.873
I1IRF8_BRADI
Uncharacterized protein.
  
 0.873
Your Current Organism:
Brachypodium distachyon
NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome
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