STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_1008ABC transporter. (416 aa)    
Predicted Functional Partners:
MYP_1007
Phosphate ABC transporter permease.
 
 0.999
MYP_1273
Polysaccharide export outer membrane protein.
  
  
 0.823
MYP_4321
Polysaccharide export periplasmic protein.
  
  
 0.821
MYP_1006
Hypothetical protein Hsw_0827.
  
  
 0.799
MYP_1005
Hypothetical protein Fleli_1568.
       0.773
MYP_1658
Competence protein.
   
    0.759
MYP_1011
Glycosyl transferase.
 
  
 0.648
MYP_1009
Hypothetical protein ACD_20C00413G0012.
 
     0.631
MYP_1013
Family 2 glycosyl transferase.
 
  
 0.612
MYP_1014
Glycosyl transferase family 2.
 
  
 0.606
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.