Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MYP_1069Transporter. (297 aa)    
Predicted Functional Partners:
MYP_269
Hypothetical protein Emtol_3479.
 
     0.629
MYP_1070
Hypothetical protein.
 
     0.617
MYP_4188
Hypothetical protein.
  
     0.586
MYP_2889
Type II secretory pathway.
  
  
 0.583
MYP_2879
Type II secretory pathway.
  
  
 0.564
MYP_1371
DoxX family protein.
  
     0.531
MYP_1461
Hypothetical protein.
 
  
 0.503
MYP_2226
DNA protecting protein DprA.
 
  
 0.501
MYP_2208
Hypothetical protein CHU_1553.
  
     0.477
MYP_768
Integral outer membrane protein.
  
     0.462
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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