Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
MYP_106 | MYP_107 | Response regulator receiver signal transduction histidine kinase. | Hypothetical protein. | 0.875 |
MYP_106 | MYP_1121 | Response regulator receiver signal transduction histidine kinase. | Hypothetical protein. | 0.997 |
MYP_106 | MYP_131 | Response regulator receiver signal transduction histidine kinase. | Histidine kinase. | 0.627 |
MYP_106 | MYP_1487 | Response regulator receiver signal transduction histidine kinase. | Signal transduction histidine kinase. | 0.997 |
MYP_106 | MYP_1488 | Response regulator receiver signal transduction histidine kinase. | Hypothetical protein. | 0.999 |
MYP_106 | MYP_1604 | Response regulator receiver signal transduction histidine kinase. | Phytochrome-like protein cph1. | 0.905 |
MYP_106 | MYP_161 | Response regulator receiver signal transduction histidine kinase. | Phytochrome-like protein cph1. | 0.994 |
MYP_106 | MYP_1614 | Response regulator receiver signal transduction histidine kinase. | Hypothetical protein. | 0.975 |
MYP_106 | MYP_163 | Response regulator receiver signal transduction histidine kinase. | PAS domain-containing protein. | 0.999 |
MYP_106 | MYP_1706 | Response regulator receiver signal transduction histidine kinase. | Hypothetical protein. | 0.999 |
MYP_107 | MYP_106 | Hypothetical protein. | Response regulator receiver signal transduction histidine kinase. | 0.875 |
MYP_107 | MYP_1121 | Hypothetical protein. | Hypothetical protein. | 0.997 |
MYP_107 | MYP_131 | Hypothetical protein. | Histidine kinase. | 0.624 |
MYP_107 | MYP_1487 | Hypothetical protein. | Signal transduction histidine kinase. | 0.997 |
MYP_107 | MYP_1488 | Hypothetical protein. | Hypothetical protein. | 0.999 |
MYP_107 | MYP_1604 | Hypothetical protein. | Phytochrome-like protein cph1. | 0.905 |
MYP_107 | MYP_161 | Hypothetical protein. | Phytochrome-like protein cph1. | 0.994 |
MYP_107 | MYP_1614 | Hypothetical protein. | Hypothetical protein. | 0.975 |
MYP_107 | MYP_163 | Hypothetical protein. | PAS domain-containing protein. | 0.999 |
MYP_107 | MYP_1706 | Hypothetical protein. | Hypothetical protein. | 0.999 |
page 1 of 6