STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_16824-amino-4-deoxy-L-arabinose transferase,lipid A modification. (522 aa)    
Predicted Functional Partners:
MYP_1681
Hypothetical protein Solca_3574.
 
    0.884
MYP_1684
B-glycosyltransferase.
 
 
  0.827
MYP_1683
Hypothetical protein.
  
    0.823
MYP_2039
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.649
MYP_5002
Gliding motility-like protein.
  
     0.577
MYP_3087
Adhesin AidA-related.
  
     0.574
MYP_3850
Hypothetical protein CHU_1634.
  
     0.556
MYP_3535
Hypothetical protein CHU_1557.
  
     0.515
MYP_4938
CHU large protein.
  
     0.508
MYP_2911
CHU large protein.
  
     0.507
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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