STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_1906AP endonuclease. (336 aa)    
Predicted Functional Partners:
MYP_1905
Oxidoreductase-dehydrogenase.
 
 
 0.986
MYP_3179
Glucose-fructose oxidoreductase.
 
 
 0.805
MYP_4024
Hypothetical protein.
 
 
 0.798
MYP_2122
Sugar kinase.
  
 
 0.792
MYP_1002
Oxidoreductase domain-containing protein.
  
 
 0.734
MYP_401
Hypothetical protein.
    
  0.697
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
     
 0.670
MYP_1903
Transport protein.
 
     0.662
MYP_804
Prephenate dehydrogenase.
     
 0.646
MYP_1904
Xylose isomerase.
 
     0.606
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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