STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_1921Branched-chain amino acid ABC transporter ATP-binding protein. (248 aa)    
Predicted Functional Partners:
MYP_1920
Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
MYP_1919
Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
MYP_1918
Branched-chain amino acid ABC transporter periplasmic protein.
 
  
 0.994
MYP_1922
Branched-chain amino acid ABC transporter ATP-binding protein.
 
  
0.991
ureB
Bifunctional urease subunit gamma/beta; Belongs to the urease beta subunit family.
  
  
 0.746
ureC
Urease subunit alpha.
 
   
 0.689
MYP_289
GAF sensor hybrid histidine kinase.
    
  0.666
ureG
Urease accessory protein; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
   
 0.589
MYP_2320
Hypothetical protein CHU_0935.
    
 0.569
ureF
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
     
 0.563
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.