STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_2000Hypothetical protein CHU_0129. (181 aa)    
Predicted Functional Partners:
secA
Protein export cytoplasm protein SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
       0.793
MYP_2001
N-acyl-L-amino acid amidohydrolase.
       0.789
MYP_941
Hypothetical protein.
  
     0.735
MYP_2137
Hypothetical protein.
  
     0.719
MYP_768
Integral outer membrane protein.
  
     0.711
MYP_535
Hypothetical protein Slin_2018.
  
     0.707
MYP_3661
Hypothetical protein.
  
     0.698
MYP_4533
Hypothetical protein.
  
     0.689
MYP_2912
Hypothetical protein.
  
     0.679
MYP_3102
Hypothetical protein.
  
     0.676
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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