Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MYP_2016Hypothetical protein CHU_3817. (419 aa)    
Predicted Functional Partners:
MYP_2017
Phosphate ABC transporter substrate-binding protein.
  
    0.597
MYP_2779
Hypothetical protein.
  
     0.541
MYP_2019
Phosphate ABC transporter permease.
  
    0.487
MYP_2018
Phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
       0.478
MYP_2015
Beta-galactosidase.
       0.467
MYP_2014
Hypothetical protein.
       0.443
MYP_2780
Hypothetical protein.
  
     0.421
MYP_3149
Hypothetical protein.
  
     0.417
MYP_1916
Hypothetical protein CHU_1253.
  
     0.416
MYP_2778
Xenobiotic-transporting ATPase.
  
    0.413
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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