STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_2291Carbohydrate-binding protein SusD. (486 aa)    
Predicted Functional Partners:
MYP_2456
TonB-denpendent receptor.
 
 
 0.957
MYP_2292
TonB-denpendent receptor.
     0.889
MYP_2296
Hypothetical protein.
     0.819
MYP_815
Sterol desaturase.
  
     0.723
MYP_2849
Outer membrane cobalamin receptor protein.
  
 
   0.662
MYP_2290
Hypothetical protein.
       0.639
MYP_2285
Hypothetical protein.
 
     0.635
MYP_2597
Transporter.
  
     0.556
MYP_2155
Hypothetical protein Palpr_1601.
  
     0.549
MYP_4484
DoxX family protein.
  
     0.548
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.