STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_2445TPR repeat-containing protein. (519 aa)    
Predicted Functional Partners:
MYP_289
GAF sensor hybrid histidine kinase.
   
 0.925
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
  0.841
MYP_4117
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
   
 0.817
MYP_4325
Hypothetical protein.
 
    
0.809
MYP_163
PAS domain-containing protein.
   
 0.782
MYP_3768
WD repeat-containing protein.
  
 
  0.769
MYP_485
Multi-sensor hybrid histidine kinase.
   
 0.760
MYP_1488
Hypothetical protein.
   
 0.759
MYP_2077
Ankyrin repeat protein.
  
 
  0.759
MYP_3472
Hypothetical protein.
  
     0.734
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.