STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_2643Hypothetical protein CHU_1776. (229 aa)    
Predicted Functional Partners:
bshC
UPF0747 protein; Belongs to the BshC family.
 
  
 0.893
MYP_985
Dolichol-phosphate mannosyltransferase in lipid-linked oligosaccharide synthesis cluster.
  
 
  0.883
MYP_2278
Hypothetical protein Dfer_5785; Belongs to the UPF0403 family.
  
     0.715
MYP_2641
Thioredoxin reductase.
     
 0.696
MYP_2642
M24/M37 family peptidase.
       0.686
MYP_2315
GldC protein.
  
     0.609
MYP_954
Hypothetical protein MED152_05055.
  
     0.554
MYP_2122
Sugar kinase.
  
  
 0.544
MYP_3124
Hypothetical protein Hsw_2867.
  
     0.496
MYP_1238
Hypothetical protein Emtol_4262.
  
   
 0.487
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.