STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_3141Hypothetical protein. (152 aa)    
Predicted Functional Partners:
MYP_2116
Transcriptional antiterminator.
   
    0.776
MYP_3131
Hypothetical protein.
   
    0.776
MYP_3690
Hypothetical protein.
   
    0.776
MYP_3140
Hypothetical protein.
       0.625
MYP_2717
CsbD family protein; Belongs to the UPF0337 (CsbD) family.
   
  
 0.560
MYP_3142
Hypothetical protein.
       0.532
MYP_3143
Hypothetical protein.
       0.532
MYP_2386
Hypothetical protein.
  
     0.524
MYP_2152
DNA-binding DPS protein; Belongs to the Dps family.
  
  
 0.496
MYP_3468
DNA-binding ferritin-like protein; Belongs to the Dps family.
  
  
 0.496
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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