Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
MYP_1241 | MYP_2144 | Dehydrogenase. | Transketolase. | 0.999 |
MYP_1241 | MYP_3320 | Dehydrogenase. | FAD linked oxidase domain-containing protein. | 0.691 |
MYP_1241 | MYP_3779 | Dehydrogenase. | Hypothetical protein. | 0.960 |
MYP_1241 | MYP_398 | Dehydrogenase. | Beta-ketoacyl synthase. | 0.866 |
MYP_1241 | MYP_400 | Dehydrogenase. | Non-ribosomal peptide synthetase module containing protein. | 0.884 |
MYP_1241 | MYP_969 | Dehydrogenase. | Malic enzyme. | 0.989 |
MYP_1856 | MYP_3320 | Glutamate synthase (NADH) large subunit. | FAD linked oxidase domain-containing protein. | 0.753 |
MYP_1856 | MYP_3779 | Glutamate synthase (NADH) large subunit. | Hypothetical protein. | 0.935 |
MYP_1856 | MYP_398 | Glutamate synthase (NADH) large subunit. | Beta-ketoacyl synthase. | 0.926 |
MYP_1856 | MYP_400 | Glutamate synthase (NADH) large subunit. | Non-ribosomal peptide synthetase module containing protein. | 0.935 |
MYP_1856 | MYP_969 | Glutamate synthase (NADH) large subunit. | Malic enzyme. | 0.472 |
MYP_2144 | MYP_1241 | Transketolase. | Dehydrogenase. | 0.999 |
MYP_2144 | MYP_3320 | Transketolase. | FAD linked oxidase domain-containing protein. | 0.691 |
MYP_2144 | MYP_3779 | Transketolase. | Hypothetical protein. | 0.960 |
MYP_2144 | MYP_398 | Transketolase. | Beta-ketoacyl synthase. | 0.866 |
MYP_2144 | MYP_400 | Transketolase. | Non-ribosomal peptide synthetase module containing protein. | 0.884 |
MYP_2144 | MYP_969 | Transketolase. | Malic enzyme. | 0.989 |
MYP_2900 | MYP_3320 | Hypothetical protein Cpin_0220. | FAD linked oxidase domain-containing protein. | 0.751 |
MYP_2900 | MYP_440 | Hypothetical protein Cpin_0220. | Hypothetical protein. | 0.732 |
MYP_3320 | MYP_1241 | FAD linked oxidase domain-containing protein. | Dehydrogenase. | 0.691 |
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