STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_3356Hypothetical protein. (124 aa)    
Predicted Functional Partners:
MYP_3358
ArsR family transcriptional regulator.
    
  0.783
MYP_3357
Hypothetical protein.
       0.781
MYP_3355
Hypothetical protein.
 
     0.675
MYP_4314
helix-turN-helix, arac domain.
  
     0.463
MYP_2903
AraC family transcriptional regulator.
 
     0.459
MYP_1911
AraC family transcriptional regulator.
 
     0.456
MYP_3063
Hypothetical protein.
  
     0.456
MYP_2686
AraC family transcriptional regulator.
 
     0.437
MYP_3748
Hypothetical protein.
  
     0.433
MYP_1507
Hypothetical protein Echvi_4001.
  
     0.414
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.