STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_3548Glycosyl hydrolase, family 18. (564 aa)    
Predicted Functional Partners:
MYP_3549
Hypothetical protein.
 
     0.828
MYP_3551
Tail protein.
 
     0.792
MYP_3559
Hypothetical protein.
 
     0.675
MYP_3550
Hypothetical protein.
       0.669
MYP_1848
Hypothetical protein.
    
 0.642
MYP_3552
Phage tail protein.
 
     0.632
MYP_3553
Conserved hypothetical phage tail region protein.
 
     0.595
MYP_4305
PKD domain protein.
  
     0.569
MYP_1711
Peptidase S8/S53 subtilisin kexin sedolisin.
  
  
  0.567
MYP_3556
Rhs element Vgr protein.
 
     0.539
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.