MYP_3643 protein (Sporocytophaga myxococcoides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MYP_3643

AraC family transcriptional regulator. (272 aa)

Predicted Functional Partners:

MYP_289

0.788

MYP_4341

0.729

MYP_969

0.722

MYP_1856

0.705

MYP_2954

0.695

MYP_3876

0.695

MYP_3381

0.675

MYP_4485

0.659

MYP_2728

0.635

MYP_118

0.634

Your Current Organism:

Sporocytophaga myxococcoides

NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MYP_118	MYP_289	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	GAF sensor hybrid histidine kinase.	0.827
MYP_118	MYP_3381	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Putative uncharacterized protein.	0.634
MYP_118	MYP_3643	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	AraC family transcriptional regulator.	0.634
MYP_1856	MYP_289	Glutamate synthase (NADH) large subunit.	GAF sensor hybrid histidine kinase.	0.557
MYP_1856	MYP_3381	Glutamate synthase (NADH) large subunit.	Putative uncharacterized protein.	0.705
MYP_1856	MYP_3643	Glutamate synthase (NADH) large subunit.	AraC family transcriptional regulator.	0.705
MYP_1856	MYP_969	Glutamate synthase (NADH) large subunit.	Malic enzyme.	0.472
MYP_2728	MYP_289	Hypothetical protein.	GAF sensor hybrid histidine kinase.	0.728
MYP_2728	MYP_3381	Hypothetical protein.	Putative uncharacterized protein.	0.791
MYP_2728	MYP_3643	Hypothetical protein.	AraC family transcriptional regulator.	0.635
MYP_289	MYP_118	GAF sensor hybrid histidine kinase.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.827
MYP_289	MYP_1856	GAF sensor hybrid histidine kinase.	Glutamate synthase (NADH) large subunit.	0.557
MYP_289	MYP_2728	GAF sensor hybrid histidine kinase.	Hypothetical protein.	0.728
MYP_289	MYP_3381	GAF sensor hybrid histidine kinase.	Putative uncharacterized protein.	0.788
MYP_289	MYP_3643	GAF sensor hybrid histidine kinase.	AraC family transcriptional regulator.	0.788
MYP_289	MYP_3876	GAF sensor hybrid histidine kinase.	AraC family transcriptional regulator.	0.728
MYP_289	MYP_4341	GAF sensor hybrid histidine kinase.	AraC family transcriptional regulator.	0.728
MYP_289	MYP_4485	GAF sensor hybrid histidine kinase.	Transcriptional regulator.	0.728
MYP_289	MYP_969	GAF sensor hybrid histidine kinase.	Malic enzyme.	0.648
MYP_2954	MYP_3381	Cytidyltransferase.	Putative uncharacterized protein.	0.639