Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MYP_367Diguanylate cyclase. (635 aa)    
Predicted Functional Partners:
MYP_289
GAF sensor hybrid histidine kinase.
 
 
 0.989
MYP_1706
Hypothetical protein.
   
 0.983
MYP_1488
Hypothetical protein.
   
 0.975
MYP_175
Signal transduction histidine kinase.
   
 0.971
MYP_163
PAS domain-containing protein.
 
 
 0.969
MYP_372
Signal transduction four helix bundle sensory module.
   
 0.962
MYP_3865
Hypothetical protein SCE1572_31285.
   
 0.960
MYP_485
Multi-sensor hybrid histidine kinase.
   
 0.958
MYP_1948
Putative hybrid histidine kinase.
 
 
 0.946
MYP_3945
Multi-sensor hybrid histidine kinase.
 
 0.946
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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