STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_3703Precorrin-2 dehydrogenase. (210 aa)    
Predicted Functional Partners:
MYP_3702
uroporphyrin-III C-methyltransferase.
 
 0.999
MYP_3701
Sulfite reductase (NADPH); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.960
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
 
 0.952
MYP_1425
Hypothetical protein Cpin_0237.
      0.905
hemL
Glutamate-1-semialdehyde aminotransferase.
  
 0.865
MYP_1257
Hypothetical protein; Belongs to the ALAD family.
 
  
 0.851
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.778
MYP_3704
NADH oxidase.
       0.741
MYP_3705
Hypothetical protein B1NLA3E_10910.
       0.741
MYP_933
uroporphyrinogen-III synthase.
  
 
 0.696
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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