STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_3903Decarboxylase. (464 aa)    
Predicted Functional Partners:
MYP_220
Agmatine deiminase; Belongs to the agmatine deiminase family.
    
 0.904
argH
Argininosuccinate lyase.
     
 0.888
MYP_4413
Arginine deiminase.
    
  0.880
MYP_5001
acyl-CoA reductase.
  
   
 0.722
MYP_902
Formiminoglutamase-like protein; Belongs to the arginase family.
  
 
 0.716
argS
arginyl-tRNA synthetase.
 
     0.658
MYP_4929
Deoxyhypusine synthase.
 
     0.644
MYP_4414
Amidinotransferase.
     
 0.619
MYP_2142
Long-chain-fatty-acid--luciferin-component ligase.
  
     0.601
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
    0.583
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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