STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_3931Putative hemolysin secretion transport system membrane protein. (442 aa)    
Predicted Functional Partners:
MYP_3932
ABC transporter ATP-binding protein.
 
 0.987
MYP_3933
Hypothetical protein Phep_0560.
    
  0.790
MYP_3930
Carbamoyl-phosphate-synthetase.
       0.773
MYP_2778
Xenobiotic-transporting ATPase.
  
 0.759
MYP_3926
Transporter.
  
  0.612
MYP_3781
Hypothetical protein.
  
  0.553
MYP_364
Outer membrane efflux protein.
  
  0.551
MYP_163
PAS domain-containing protein.
 
  
 0.531
MYP_3929
Hypothetical protein Slin_5179.
       0.523
MYP_2595
RND transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
 0.515
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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