STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_4005Biopolymer transport protein ExbD/TolR. (114 aa)    
Predicted Functional Partners:
MYP_4006
Biopolymer transporter ExbB.
 
 
 0.990
MYP_4035
Flagellar motor protein MotA.
  
 
 0.936
MYP_770
Hypothetical protein Slin_1995.
 
 
 0.791
MYP_2100
Tonb family protein.
   
 
 0.704
MYP_2375
Protein of unknown function.
   
 
 0.704
MYP_241
tonB-like protein.
   
 
 0.704
MYP_2583
TonB family domain-containing protein.
   
 
 0.704
MYP_2584
Hypothetical protein.
   
 
 0.704
MYP_4032
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
 
 0.704
MYP_4452
Hypothetical protein CHU_3275.
   
 
 0.704
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.