STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_4016Endonuclease. (277 aa)    
Predicted Functional Partners:
MYP_2275
Aminotransferase class 5 protein; selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.923
MYP_3126
Selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.923
MYP_1580
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein.
  
 
  0.589
MYP_329
Alpha-amylase.
  
  
  0.526
MYP_2299
Alpha-amylase family protein.
  
 
 0.521
MYP_2116
Transcriptional antiterminator.
   
    0.508
MYP_3131
Hypothetical protein.
   
    0.508
MYP_3690
Hypothetical protein.
   
    0.508
MYP_2960
Trehalose 6-phosphate phosphorylase.
    
  0.496
MYP_2208
Hypothetical protein CHU_1553.
  
     0.467
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.