STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_4078RHS repeat-associated core domain-containing protein. (566 aa)    
Predicted Functional Partners:
MYP_4077
Hypothetical protein.
       0.773
MYP_3624
Hypothetical protein CHU_1521.
  
     0.748
MYP_2868
Hypothetical protein.
  
     0.736
MYP_3418
Hypothetical protein CHU_3448.
  
     0.602
MYP_4627
AraC-type helix-turn-helix domain-containing protein.
  
     0.586
MYP_4062
Hypothetical protein.
  
  
  0.584
MYP_4061
Hypothetical protein.
  
     0.579
MYP_2993
RHS repeat-associated core domain-containing protein.
 
      0.576
MYP_4055
Hypothetical protein.
  
     0.562
MYP_4054
Hypothetical protein.
  
     0.529
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.