STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_4100Cyclase. (215 aa)    
Predicted Functional Partners:
kynU
Hypothetical protein; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
 
 
 0.950
MYP_2246
Tryptophan 2,3-dioxygenase.
  
 
 0.835
MYP_4752
Molybdopterin oxidoreductase.
    
  0.712
MYP_1771
Hypothetical protein.
      0.666
MYP_3133
Aromatic ring-cleaving dioxygenase.
    
  0.490
MYP_3779
Hypothetical protein.
  
 
 0.480
MYP_4396
Hypothetical protein.
  
  
  0.409
MYP_144
Nitrate reductase, nitrite reductase (NAD(P)H); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.404
MYP_3887
Nitrate reductase/nitrite reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
    
  0.404
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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