STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYP_4181Hypothetical protein. (69 aa)    
Predicted Functional Partners:
MYP_4180
Thioesterase.
       0.773
MYP_631
Glycosyl transferase.
  
     0.751
MYP_3058
Peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
  
     0.659
MYP_4179
Phenylalanine 4-monooxygenase.
       0.580
MYP_1598
PKD domain-containing protein.
  
     0.577
MYP_3278
Transcriptional regulator, GntR family.
  
     0.538
MYP_4178
Transporter.
 
     0.522
MYP_2172
Peptidase S1 and S6 chymotrypsin/Hap.
  
     0.460
MYP_1734
VCBS repeat-containing protein.
  
     0.453
MYP_2331
FOG protein containing PKD repeat.
  
     0.448
Your Current Organism:
Sporocytophaga myxococcoides
NCBI taxonomy Id: 153721
Other names: ATCC 10010, Cytophaga myxococcoides, DSM 11118, LMG 8393, LMG:8393, S. myxococcoides, Spirochaeta cytophaga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.